Here you can find an example of what my konwerter can do for you.

There are two postscript (pdf as well) files presented here. The first one is the crude file. It shows you how it looks like during writing. As you can see, both in the text and figures there are labels. Therefore during writing you can very easy refer to your compounds, just by calling their name. You do not need to remember labels exactly, because it is very easy and fast to look on the scheme to find out what the label is. Tu watch the crude file press below link:
reaction.ps
reaction.pdf

The second file shows the same document processed by konwerter. As you can see all labels were converted to numbers. On each side you can find different numbering styles. As you can see there is a possibility to use all styles at one time. To see the processed document press below links:
reaction.tex.auto.ps
reaction.tex.auto.pdf